Final operational classification record

Final operational classification record

Every organism, stage, cell, consortium, or ecosystem should receive a record in this order:

FieldClassification question
1. UnitWhat biological system is being bounded?
2. StateAt what life-history or metabolic state?
3. EnvironmentWhat boundary conditions apply?
4. Free-energy sourceLight or chemical free energy?
5. Acquisition interfaceHow is the resource captured?
6. Energy identityPhototroph, chemotroph, or flexible?
7. Electron sourceLithotroph, organotroph, mixed, electrotrophic modifier?
8. Carbon sourceAutotroph, heterotroph, or mixotroph?
9. Electron dispositionRespiration, fermentation, cyclic flow, export, or assimilation?
10. TransductionWhat conversion mechanism is used?
11. ConservationChemiosmosis, substrate-level phosphorylation, bifurcation, etc.?
12. Immediate energetic stateATP, ion motive force, reducing power, activated intermediates?
13. Matter assimilationWhat carbon, nitrogen, phosphorus, sulfur, and minerals enter biomass?
14. Functional allocationMaintenance, growth, reproduction, movement, defense, control, external work?
15. StorageWhat reserves or buffers are used?
16. Temporal strategyContinuous, pulsed, cyclic, dormant, or opportunistic?
17. Developmental stateProvisioned, dependent, growing, reproductive, dormant, senescent, etc.?
18. Dependency architectureSelf-sufficient, cross-fed, syntrophic, symbiotic, parasitic?
19. Ecological roleProducer, consumer, parasite, detritivore, decomposer, engineer?
20. OutputsBiomass, offspring, metabolites, waste, terminal products, heat?
21. Postmortem fateScavenging, decomposition, mineralization, or sequestration?
22. PlasticityWhich classifications change with stage or environment?

The complete energetic identity can therefore be expressed as:

Energetic profile= [unit and state] +[free-energy source] +[capture interface] +[electron, carbon, and acceptor identity] +[conversion and conservation] +[matter assimilation] +[allocation and storage] +[temporal and ontogenetic strategy] +[dependency and ecological role] +[outputs, death, and final fate]

That is the actual corrected layout: from the physical opportunity preceding metabolism, through cellular conversion, organismal expenditure, every recurring life-history state, biological transfer, death, decomposition, and ecosystem-scale dissipation.